redefine_obj

Helper to modify images, masks, features, pops, graphs in a `IFC_data` object when features_def is changed.

internal

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®' 'Cytek®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

Yohann Demont

Tools for Imaging Flow Cytometry

Gautier Stoll

Guido Kroemer

Jean-Pierre Marolleau

Loïc Garçon

redefine_obj function

<dl><dt>obj</dt>
<dd>an `IFC_data` object. Default is missing.</dd>
<dt>new_feat_def</dt>
<dd>a list with new definitions from redefine_features_def() or redefine_features_def_msk_img().</dd>
<dt>...</dt>
<dd>Other arguments to be passed.</dd></dl>

Arguments

IFC_data Redefinition — redefine_obj

<dl>

<dt>obj</dt>
<dd>an `IFC_data` object. Default is missing.</dd>


<dt>new_feat_def</dt>
<dd>a list with new definitions from redefine_features_def() or redefine_features_def_msk_img().</dd>


<dt>...</dt>
<dd>Other arguments to be passed.</dd>

</dl>

redefine_obj: IFC_data Redefinition

Description

Usage

Value

Arguments