relayout

Reconstructs `IFC_graphs` object layout.

internal

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®' 'Cytek®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

Yohann Demont

Tools for Imaging Flow Cytometry

Gautier Stoll

Guido Kroemer

Jean-Pierre Marolleau

Loïc Garçon

relayout function

<dl><dt>graphs</dt>
<dd>an `IFC_graphs` object extracted with features extracted.</dd>
<dt>size</dt>
<dd>Integer, graphs' sizes. Default is 320.</dd>
<dt>splitterdistance</dt>
<dd>Integer. Default is 120.</dd>
<dt>stats</dt>
<dd>Logical. Whether to show stats or not. Default is TRUE.</dd>
<dt>byrow</dt>
<dd>Logical. Whether to layout graphs by row or not. Default is FALSE.</dd>
<dt>times</dt>
<dd>Integer. Max number of graphs by row/column (depending on `byrow`). Default is 4.</dd>
<dt>layout</dt>
<dd>Integer matrix. Desired layout. Default is NULL.
When NULL, the default, graphs will be relayout using `times` and `byrow` parameters.
Otherwise, layout will be used to determine the position of the graphs (NA value can be used for empty place).
Note that when not NULL layout should contain all indices of graphs only once.</dd></dl>

Arguments

Change Graphs Layout — relayout

<dl>

<dt>graphs</dt>
<dd>an `IFC_graphs` object extracted with features extracted.</dd>


<dt>size</dt>
<dd>Integer, graphs' sizes. Default is 320.</dd>


<dt>splitterdistance</dt>
<dd>Integer. Default is 120.</dd>


<dt>stats</dt>
<dd>Logical. Whether to show stats or not. Default is TRUE.</dd>


<dt>byrow</dt>
<dd>Logical. Whether to layout graphs by row or not. Default is FALSE.</dd>


<dt>times</dt>
<dd>Integer. Max number of graphs by row/column (depending on `byrow`). Default is 4.</dd>


<dt>layout</dt>
<dd>Integer matrix. Desired layout. Default is NULL.
When NULL, the default, graphs will be relayout using `times` and `byrow` parameters.
Otherwise, layout will be used to determine the position of the graphs (NA value can be used for empty place).
Note that when not NULL layout should contain all indices of graphs only once.</dd>

</dl>

relayout: Change Graphs Layout

Description

Usage

Value

Arguments