toXML2_graphpop_gs

Helper to convert pops and regions to XML nodes in GatingML files.

internal

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®' 'Cytek®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

Yohann Demont

Tools for Imaging Flow Cytometry

Gautier Stoll

Guido Kroemer

Jean-Pierre Marolleau

Loïc Garçon

toXML2_graphpop_gs function

<dl><dt>pop</dt>
<dd>a member of `IFC_pops` object.</dd>
<dt>reg</dt>
<dd>a member of `IFC_regions` object.</dd>
<dt>verbose</dt>
<dd>whether to display message about current action. Default is FALSE.</dd></dl>

Arguments

Graphical Population GatingML Conversion to XML2 — toXML2_graphpop_gs

<dl>

<dt>pop</dt>
<dd>a member of `IFC_pops` object.</dd>


<dt>reg</dt>
<dd>a member of `IFC_regions` object.</dd>


<dt>verbose</dt>
<dd>whether to display message about current action. Default is FALSE.</dd>

</dl>

toXML2_graphpop_gs: Graphical Population GatingML Conversion to XML2

Description

Usage

Value

Arguments