tryReportFileCreation

Checks if report files can be created.

internal

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®' 'Cytek®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.

Yohann Demont

Tools for Imaging Flow Cytometry

Gautier Stoll

Guido Kroemer

Jean-Pierre Marolleau

Loïc Garçon

tryReportFileCreation function

<dl><dt>fileName</dt>
<dd>default fileName path.</dd>
<dt>write_to</dt>
<dd>pattern used to export file(s).
Placeholders, like c("%d/%s_fromR.pdf", "%d/%s_fromR.csv"), will be substituted: 
-%d: with full path directory of 'fileName' 
-%p: with first parent directory of 'fileName' 
-%e: with extension of 'fileName' (without leading .) 
-%s: with shortname from 'fileName' (i.e. basename without extension). 
Exported file(s) extension(s) will be deduced from this pattern. Note that has to be a .pdf and/or .csv.</dd>
<dt>overwrite</dt>
<dd>whether to overwrite file or not. Default is FALSE.
Note that if TRUE, it will overwrite file. In addition a warning message will be sent.</dd></dl>

Arguments

Report File Creation — tryReportFileCreation

<dl>

<dt>fileName</dt>
<dd>default fileName path.</dd>


<dt>write_to</dt>
<dd>pattern used to export file(s).
Placeholders, like c("%d/%s_fromR.pdf", "%d/%s_fromR.csv"), will be substituted: 
-%d: with full path directory of 'fileName' 
-%p: with first parent directory of 'fileName' 
-%e: with extension of 'fileName' (without leading .) 
-%s: with shortname from 'fileName' (i.e. basename without extension). 
Exported file(s) extension(s) will be deduced from this pattern. Note that has to be a .pdf and/or .csv.</dd>


<dt>overwrite</dt>
<dd>whether to overwrite file or not. Default is FALSE.
Note that if TRUE, it will overwrite file. In addition a warning message will be sent.</dd>

</dl>

tryReportFileCreation: Report File Creation

Description

Usage

Value

Arguments