IMPCdata (version 1.6.0)

getAlleles: Method "getAlleles"

Description

Returns alleles (MGI IDs or temporary IDs if the MGI ID is not assigned yet) that are processed for a specified combination of parameter, procedure, pipeline and phenotyping center. Temporary allele ID starts with "NULL".

Usage

getAlleles(PhenCenterName=NULL,PipelineID=NULL,ProcedureID=NULL, ParameterID=NULL,StrainID=NULL)

Arguments

PhenCenterName

IMPC phenotyping center; mandatory argument

PipelineID

IMPC pipeline ID; mandatory argument

ProcedureID

IMPC procedure ID; mandatory argument

ParameterID

IMPC parameter ID; mandatory argument

StrainID

IMPC strain ID; optional argument

Value

Returns the list of IMPC alleles (IDS of alleles) that are processed measuring specified parameter within the procedure in the pipeline run by phenotyping center.

Examples

    listAlleles  <- getAlleles("WTSI","MGP_001","IMPC_CBC_001",
    "IMPC_CBC_003_001")
    for (alleleIndex in 1:length(listAlleles)) {
        print(paste(listAlleles[alleleIndex],"-",
                        getName("allele_accession_id","allele_symbol",
                        listAlleles[alleleIndex])))
    }