IMPCdata (version 1.6.0)

getGenes: Method "getGenes"

Description

Returns the genes (MGI IDs) that are reported for a specified combination of parameter, procedure, pipeline and phenotyping center.

Usage

getGenes(PhenCenterName=NULL,PipelineID=NULL,ProcedureID=NULL,ParameterID=NULL,StrainID=NULL)

Arguments

PhenCenterName

IMPC phenotyping center; mandatory argument

PipelineID

IMPC pipeline ID; mandatory argument

ProcedureID

IMPC procedure ID; mandatory argument

ParameterID

IMPC parameter ID; mandatory argument

StrainID

IMPC strain ID; optional argument

Value

Returns the list of IMPC genes (IDS of genes) that are processed measuring specified parameter within the procedure in the pipeline run by phenotyping center.

Examples

    listGenes  <- getGenes("WTSI","MGP_001","IMPC_CBC_001","IMPC_CBC_003_001")
    for (geneIndex in 1:length(listGenes)) {
        print(paste(listGenes[geneIndex],"-",
                        getName("gene_accession_id","gene_symbol",listGenes[geneIndex])))
    }