IMPCdata (version 1.6.0)

getIMPCDataset: Method "getIMPCDataset"

Description

Returns the IMPC dataset for a knockout line for a specified combination of parameter, procedure, pipeline, phenotyping centre, allele and strain (genetic background) that is used within the data analysis pipeline implemented on the IMPC database.

Usage

getIMPCDataset(PhenCenterName=NULL,PipelineID=NULL,ProcedureID=NULL,ParameterID=NULL, AlleleID=NULL,StrainID=NULL)

Arguments

PhenCenterName

IMPC phenotyping center; mandatory argument

PipelineID

IMPC pipeline ID; mandatory argument

ProcedureID

IMPC procedure ID; mandatory argument

ParameterID

IMPC parameter ID; mandatory argument

AlleleID

IMPC allele ID; mandatory argument

StrainID

IMPC strain ID; optional argument

Value

Returns the IMPC dataset as a data frame. - metadata_group string a string indicating a group of experimental and control mice that have the same metadata (see also biological_sample_group)- metadata list of strings list showing all relevant metadata in effect when the data was collected

Examples

    df <- getIMPCDataset("WTSI","MGP_001","IMPC_CBC_001","IMPC_CBC_008_001","MGI:4433526")