IMPCdata (version 1.6.0)

getIMPCTable: Method "getIMPCTable"

Description

Returns the IMPC dataset. There are optional arguments to subset the IMPC dataset. Be aware that without filters this file output will be very large and the query will be time intensive.

Usage

getIMPCTable(fileName="IMPCdata",PhenCenterName=NULL, PipelineID=NULL, ProcedureID=NULL, ParameterID=NULL,  AlleleID=NULL, StrainID=NULL, multipleFiles=TRUE,recordsPerFile=10000)

Arguments

fileName

name of the file where to save resulting table with IMPC objects; mandatory argument; default value is set to 'IMPCdata'

PhenCenterName

IMPC phenotyping center

PipelineID

IMPC pipeline ID

ProcedureID

IMPC procedure ID

ParameterID

IMPC parameter ID

AlleleID

allele ID

StrainID

strain ID

multipleFiles

flag: "FALSE" value to get all records into one specified file; "TRUE" value (default) to split records across multiple files named starting with 'fileName'

recordsPerFile

number that specifies how many records to write into one file; default value is 10000

Value

Returns the IMPC dataset.

Examples

    getIMPCTable("./IMPCData_WTSI","WTSI","MGP_001","IMPC_CBC_001","IMPC_CBC_003_001","MGI:4431644")