IMPCdata (version 1.6.0)

getPipelines: Method "getPipelines"

Description

Returns the list of IMPC pipelines (IMPReSS IDs) that are run by specified phenotyping center.

Usage

getPipelines(PhenCenterName=NULL,excludeLegacyPipelines=TRUE)

Arguments

PhenCenterName

IMPC phenotyping center; mandatory argument

excludeLegacyPipelines

flag: "FALSE" value to get all pipelines including legacy pipelines; "TRUE" value (default) to get current IMPC pipelines excluding legacy pipelines

Value

Returns the list of IMPC pipelines (IDS of pipelines) that are run by specified phenotyping center.

Examples

    listPipelines  <- getPipelines("WTSI")
    for (pipelineIndex in 1:length(listPipelines)) {
        print(paste(listPipelines[pipelineIndex],"-",
                    getName("pipeline_stable_id","pipeline_name",listPipelines[pipelineIndex])))
    }