IMPCdata (version 1.6.0)

getStrains: Method "getStrains"

Description

Returns the genetic background (MGI IDs) from which the knockout mice were derived for a specific combination of pipeline, procedure and paramater for a phenotyping center.

Usage

getStrains(PhenCenterName=NULL,PipelineID=NULL,ProcedureID=NULL,ParameterID=NULL)

Arguments

PhenCenterName

IMPC phenotyping center; mandatory argument

PipelineID

IMPC pipeline ID; mandatory argument

ProcedureID

IMPC procedure ID; mandatory argument

ParameterID

IMPC parameter ID; mandatory argument

Value

Returns the list of IMPC strains (IDS of strains) that are processed measuring specified parameter within the procedure in the pipeline run by phenotyping center.

Examples

    listStrains  <- getStrains("WTSI","MGP_001","IMPC_CBC_001","IMPC_CBC_003_001")
    for (strainIndex in 1:length(listStrains)) {
        print(paste(listStrains[strainIndex],"-",
                        getName("strain_accession_id","strain_name",listStrains[strainIndex])))
    }