IMPCdata (version 1.6.0)

getZygosities: Method "getZygosities"

Description

Returns the list of zygosities (homozygous, heterozygous and hemizygous) for mice that were measured for a gene/allele for a specificed combination of parameter, procedure, pipeline and phenotyping center.

Usage

getZygosities(PhenCenterName=NULL,PipelineID=NULL,ProcedureID=NULL,ParameterID=NULL, StrainID=NULL,GeneID=NULL, AlleleID=NULL)

Arguments

PhenCenterName

IMPC phenotyping center; mandatory argument

PipelineID

IMPC pipeline ID; mandatory argument

ProcedureID

IMPC procedure ID; mandatory argument

ParameterID

IMPC parameter ID; mandatory argument

StrainID

IMPC strain ID; optional argument

GeneID

IMPC gene ID; optional argument

AlleleID

IMPC allele ID; optional argument

Value

Returns the list of IMPC genes (IDS of genes) that are processed measuring specified parameter within the procedure in the pipeline run by phenotyping center.

Examples

    listZygosities  <- getZygosities("WTSI","MGP_001","IMPC_CBC_001","IMPC_CBC_003_001",GeneID="MGI:1194894")
    for (zygosityIndex in 1:length(listZygosities)) {
        print(listZygosities[zygosityIndex])
    }