rgeneric-class

rgeneric

rgeneric.default

rgeneric.rgeneric

rgeneric.inla.rgeneric

print.rgeneric

summary.rgeneric

plot.rgeneric

Organize data for the latent GMRF R interface for <code>INLA</code>.
The rgeneric default method.

Contain code to work with a C struct, in short
cgeneric, to define a Gaussian Markov random (GMRF) model.
The cgeneric contain code to specify GMRF elements such as
the graph and the precision matrix, and also the initial and
prior for its parameters, useful for model inference.
It can be accessed from a C program and is the recommended
way to implement new GMRF models in the 'INLA' package
(<https://www.r-inla.org>).
The 'INLAtools' implement functions to evaluate
each one of the model specifications from R.
The implemented functionalities leverage the use
of 'cgeneric' models and provide a way to debug
the code as well to work with the prior for the
model parameters and to sample from it.
A very useful functionality is the Kronecker product method
that creates a new model from multiple cgeneric models.
It also works with the rgeneric, the R version of the
cgeneric intended to easy try implementation of new GMRF models.
The Kronecker between two cgeneric models was used in
Sterrantino et. al. (2024) <doi:10.1007/s10260-025-00788-y>,
and can be used to build the spatio-temporal intrinsic interaction
models for what the needed constraints are automatically set.

Elias Teixeira Krainski

INLAtools

Functionalities for the 'INLA' Package

Finn Lindgren

Haavard Rue’

rgeneric-class function

<dl><dt>model</dt>
<dd>For the default method, the model defined as a function.
See the 'rgeneric' vignette from the INLA package.</dd>
<dt>debug</dt>
<dd>logical indicating debug state.</dd>
<dt>compile</dt>
<dd>logical indicating to compile the model.</dd>
<dt>optimize</dt>
<dd>logical indicating if only the elements
of the precision matrix are returned.</dd>
<dt>...</dt>
<dd>not used</dd>
<dt>x</dt>
<dd>a rgeneric object</dd>
<dt>object</dt>
<dd>a rgeneric object</dd>
<dt>y</dt>
<dd>not used</dd></dl>

Arguments

<ul>
<li><code>rgeneric(rgeneric)</code>: Returns the model object unchanged.</li>
<li><code>rgeneric(inla.rgeneric)</code>: Converts a regular <code>inla.rgeneric</code> object to <code>rgeneric</code>.</li>
<li><code>print(rgeneric)</code>: Print the rgeneric object</li>
<li><code>summary(rgeneric)</code>: A summary for a rgeneric object</li>
<li><code>plot(rgeneric)</code>: A plot for a rgeneric object</li>
</ul>

Functions

Organize data for the latent GMRF R interface for INLA. — rgeneric-class

<dl>

<dt>model</dt>
<dd>For the default method, the model defined as a function.
See the 'rgeneric' vignette from the INLA package.</dd>


<dt>debug</dt>
<dd>logical indicating debug state.</dd>


<dt>compile</dt>
<dd>logical indicating to compile the model.</dd>


<dt>optimize</dt>
<dd>logical indicating if only the elements
of the precision matrix are returned.</dd>


<dt>...</dt>
<dd>not used</dd>


<dt>x</dt>
<dd>a rgeneric object</dd>


<dt>object</dt>
<dd>a rgeneric object</dd>


<dt>y</dt>
<dd>not used</dd>

</dl>

rgeneric-class: Organize data for the latent GMRF R interface for `INLA`.

Description

Usage

Value

Arguments

Functions