muxHeatmap

A data.frame or data.table.  Should have at least two columns, 
one of which has the name 'channel'.

data

Character string specifying the name of the column to be used 
for the colour scaling.

zValue


Creates a plot representing the layout of a MinION flow cell.  Each circle
represents an individual channel with the intensity relecting a specified 
sequencing metric.  This function is a more generalised version of 
<code><a rd-options="" href="/link/layoutPlot?package=IONiseR&version=1.2.2" data-mini-rdoc="IONiseR::layoutPlot">layoutPlot</a></code>, allowing the user to map any value the like on 
the channel layout.


IONiseR provides tools for the quality assessment of
Oxford Nanopore MinION data. It extracts summary statistics
from a set of fast5 files and can be used either before or
after base calling.  In addition to standard summaries of the
read-types produced, it provides a number of plots for
visualising metrics relative to experiment run time or
spatially over the surface of a flowcell.

Mike Smith

IONiseR

Quality Assessment Tools for Oxford Nanopore MinION data

muxHeatmap function


Creates a plot representing the layout of a MinION flow cell.  Each circle
represents an individual channel with the intensity relecting a specified 
sequencing metric.  This function is a more generalised version of 
<code><a rd-options='' href='layoutPlot'>layoutPlot</a></code>, allowing the user to map any value the like on 
the channel layout.


muxHeatmap: Create layout plot of flowcell

Description

Usage

Arguments

Value