IONiseR (version 1.2.2)

plotReadCategoryQuals: Visualise the mean base quality of each read

Description

Generates a box plot showing the mean base quality for each read, broken down into the three categories of read type that can be found in a fast5 file.

Usage

plotReadCategoryQuals(summaryData)

Arguments

summaryData

Object of class Fast5Summary.

Value

Returns an object of class gg representing the plot.

Examples

if( require(minionSummaryData) ) {
   data(s.typhi.rep2, package = 'minionSummaryData')
   plotReadCategoryQuals( s.typhi.rep2 )
}