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IPMpack (version 1.6)

stochGrowthRateSampleListDD: Estimating the stochastic invasion rate.

Description

Estimates the stochastic invasion rate in the presence of density dependence in seedling establishment by iteration; operates by sampling a list of IPMs and recalculating the probability of seed establishment at each time-step.

Usage

stochGrowthRateSampleListDD(listPmatrix, listFmatrix, nRunIn, tMax,seedList)

Arguments

listPmatrix
a list of IPM P matrices corresponding to possible states of the environment.
listFmatrix
a list of IPM F matrices corresponding to possible states of the environment.
nRunIn
numeric, the size of the burnin,
tMax
numeric, the total samples desired.
seedList
numeric, a vector of the number of successful recruit corresponding to possible states of the environment.

Value

  • a numeric converging on high enough log vs for sufficient tMax.

See Also

makeListFmatrix; makeListPmatrix; stochGrowthRateSampleList