FilterMatrix-class

filterRules,FilterMatrix-method

[,FilterMatrix-method

cbind,FilterMatrix-method

rbind,FilterMatrix-method

FilterMatrix

show,FilterMatrix-method

summary,FilterMatrix-method

A <code>FilterMatrix</code> object is a matrix meant for storing
  the logical output of a set of <code>FilterRules</code>, where
  each rule corresponds to a column. The <code>FilterRules</code> are stored
  within the <code>FilterMatrix</code> object, for the sake of
  provenance. In general, a <code>FilterMatrix</code> behaves like an
  ordinary <code><a rd-options="" href="/link/matrix?package=IRanges&version=2.2.9" data-mini-rdoc="IRanges::matrix">matrix</a></code>.


classes

methods

The package provides efficient low-level and highly reusable S4
classes for storing ranges of integers, RLE vectors (Run-Length
Encoding), and, more generally, data that can be organized
sequentially (formally defined as Vector objects), as well as views
on these Vector objects.
Efficient list-like classes are also provided for storing big
collections of instances of the basic classes. All classes in
the package use consistent naming and share the same rich and
consistent "Vector API" as much as possible.

Bioconductor Package Maintainer

IRanges

Infrastructure for manipulating intervals on sequences

FilterMatrix-class function

In the code snippets below, <code>x</code> is a <code>FilterMatrix</code> object. <dl>
    <dt></dt><dd><code>filterRules(x)</code>: Get the <code>FilterRules</code>
      corresponding to the columns of the matrix.
    </dd> </dl> 

Accessor methods

<dl>
    <dt></dt><dd>
      <code>FilterMatrix(matrix, filterRules)</code>: Constructs a
      <code>FilterMatrix</code>, from a given <code>matrix</code> and
      <code>filterRules</code>. Not usually called by the user, see
      <code><a rd-options="" href="/link/evalSeparately?package=IRanges&version=2.2.9" data-mini-rdoc="IRanges::evalSeparately">evalSeparately</a></code>.
    </dd> </dl> 

Constructor

<dl>
    <dt></dt><dd>
      <code>summary(object, discarded = FALSE, percent = FALSE)</code>:
      Returns a numeric vector containing the total number of records
      (<code>nrow</code>), the number passed by each filter, and the number of
      records that passed every filter. If <code>discarded</code> is
      <code>TRUE</code>, then the numbers are inverted (i.e., the values are
      subtracted from the number of rows). If <code>percent</code> is
      <code>TRUE</code>, then the numbers are percent of total.
    </dd> </dl> 

Utilities

A <code>FilterMatrix</code> object is a matrix meant for storing
  the logical output of a set of <code>FilterRules</code>, where
  each rule corresponds to a column. The <code>FilterRules</code> are stored
  within the <code>FilterMatrix</code> object, for the sake of
  provenance. In general, a <code>FilterMatrix</code> behaves like an
  ordinary <code><a rd-options='' href='matrix'>matrix</a></code>.


FilterMatrix-class: Matrix for Filter Results

Description

Arguments

Accessor methods

Constructor

Utilities

See Also