ISAT (version 1.0.5)

Extract Cell Density and Nearest Distance Based on 'PerkinElmer InForm' Software Output

Description

Reads the output of the 'PerkinElmer InForm' software . In addition to cell-density count, it can derive statistics of intercellular spatial distance for each cell-type.

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Version

Install

install.packages('ISAT')

Monthly Downloads

161

Version

1.0.5

License

GPL-2

Maintainer

Minyu Wang

Last Published

August 20th, 2018

Functions in ISAT (1.0.5)

getFileCount

Get the count number of each phenotype for each tissue category

findNN

Find the nearest neighbour (NN) given a cell and a group of cells;

procDist

Extract the statistics from the result given by findNNs

findNNs

Read a file and compute the NN through permutations;