ISOpureS2.model_core.compute_loglikelihood

a GxD matrix representing gene expression profiles of tumor samples

tumordata

list containing all the parameters updated in ISOpure step two iterations

model

Computes complete loglikelihood given all model parameters for step 2

math

Deconvolution of mixed tumour profiles into normal and cancer for each patient, using
the ISOpure algorithm in Quon et al. Genome Medicine, 2013 5:29. Deconvolution requires
mixed tumour profiles and a set of unmatched "basis" normal profiles.

ISOpureS2.model_core.compute_loglikelihood: Compute loglikelihood given all model parameters for step 2

Description

Usage

Arguments

Value