ISOpureS2.model_optimize.vv.vv_compute_loglikelihood

the column sums of log(theta), a 1xK matrix

sum_log_theta

Computes the part of the loglikelihood function relevant to optimizing vv for step 2.

math

Deconvolution of mixed tumour profiles into normal and cancer for each patient, using
the ISOpure algorithm in Quon et al. Genome Medicine, 2013 5:29. Deconvolution requires
mixed tumour profiles and a set of unmatched "basis" normal profiles.

ISOpureS2.model_optimize.vv.vv_compute_loglikelihood: Compute loglikelihood relevant to vv for step 2

Description

Usage

Arguments

Value