ISOpureS2.model_core.compute_loglikelihood

a GxD matrix representing gene expression profiles of tumor samples

tumordata

list containing all the parameters updated in ISOpure step two iterations

model

Computes complete loglikelihood given all model parameters for step 2

math

Deconvolution of mixed tumour profiles into normal and cancer for each patient, using
the ISOpure algorithm in Quon et al. Genome Medicine, 2013 5:29. Deconvolution requires
mixed tumour profiles and a set of unmatched "basis" normal profiles.

Paul C. Boutros

ISOpureR

Deconvolution of Tumour Profiles

Gerald Quon 

Catalina V Anghel 

Syed Haider 

Francis Nguyen 

Amit G Deshwar 

Quaid D Morris 

Paul C Boutros 

ISOpureS2.model_core.compute_loglikelihood function

Compute loglikelihood given all model parameters for step 2 — ISOpureS2.model_core.compute_loglikelihood

Compute loglikelihood given all model parameters for step 2

ISOpureS2.model_core.compute_loglikelihood: Compute loglikelihood given all model parameters for step 2

Description

Usage

Arguments

Value