ISOpureS2.model_core.optmodel

a GxD matrix representing gene expression profiles of tumor samples

tumordata

list containing all the parameters to be optimized

model

(optional) minimum number of iterations of optimization algorithm, 
		default is 35

NUM_ITERATIONS

Optimizes the ISOpure parameters for step 2 cyclically until convergence

math

Deconvolution of mixed tumour profiles into normal and cancer for each patient, using
the ISOpure algorithm in Quon et al. Genome Medicine, 2013 5:29. Deconvolution requires
mixed tumour profiles and a set of unmatched "basis" normal profiles.

Paul C. Boutros

ISOpureR

ISOpureS2.model_core.optmodel: Optimizes the ISOpure parameters for step 2

Description

Usage

Arguments

Value