ISoLDE (version 1.0.2)

Integrative Statistics of alleLe Dependent Expression

Description

This package provides ISoLDE a new method for identifying imprinted genes. This method is dedicated to data arising from RNA sequencing technologies. The ISoLDE package implements original statistical methodology described in the publication below.

Copy Link

Version

1.0.2

License

GPL (>= 2.0)

Maintainer

Christelle Reyns

Last Published

February 15th, 2017

Functions in ISoLDE (1.0.2)

readRawInput

READ THE RAW DATA FILE

rawASRcounts

RAW ALLELE SPECIFIC READ (ASR) COUNTS FOR AN EXPERIENCE WITH MORE THAN TWO REPLICATES

ISoLDE-package

INTEGRATIVE STATISTICS OF ALLELE DEPENDENT EXPRESSION

readTarget

READ THE TARGET FILE

readNormInput

READ THE NORMALIZED DATA FILE

target

METADATA ABOUT THE ASR COUNT DATA.

isolde_test

Statistical analysis of Allele specific read (ASR) counts

filterT

FILTERING GENES BEFORE STATISTICAL ANALYSIS

normASRcounts

NORMALIZED ALLELE SPECIFIC READ (ASR) COUNTS FOR AN EXPERIENCE WITH MORE THAN TWO REPLICATES

filteredASRcounts

NORMALIZED AND FILTERED ALLELE SPECIFIC READ (ASR) COUNTS FOR AN EXPERIENCE WITH MORE THAN TWO REPLICATES