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IVAS (version 1.4.0)
Identification of genetic Variants affecting Alternative Splicing
Description
Identification of genetic variants affecting alternative splicing.
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Version
Version
1.4.0
1.2.0
1.0.0
Version
1.4.0
License
GPL-2
Maintainer
Seonggyun Han
Last Published
February 15th, 2017
Functions in IVAS (1.4.0)
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saveBplot
Save boxplots
samplesnp
CEU genotype data
sqtlfinder
Find SQTLs.
IVAS-package
IVAS : Identification of genomic variants affecting Alternative Splicing
chrseparate
Separate a TranscriptDb object based on a chromosome.
MsqtlFinder
Find SQTLs in multiple genes.
findAlternative
Find alternative exons of a gene.
calSignificant
Calculates P.values by using two statistical models.
samplesnplocus
snplocus
sampleexp
CEU expression data
findOversnp
Find SNPs which belongs to alternative exons and flanking introns of them.