IdMappingAnalysis (version 1.16.0)

ecdf.plot.JointIdMap: Interactive wrapper for IdMapCounts$plot

Description

Interactive wrapper of the IdMapDiff$plot allowing to select the ID Map encapsulated within the given JointIdMap object for a ecdf plot through the dialog.

Usage

"ecdf.plot"(this, idMapNames="loop", complement=TRUE, log=TRUE, new.plot=FALSE, file.copy=FALSE, copy.zoom=1, verbose=TRUE, ...)

Arguments

jointIdMap

JointIdMap object from which ID Map counts information is extracted.

idMapNames

either ID Map names, 'menu' or 'loop'. If ID Map names, the functionality is similar to IdMapCounts.plot If 'menu' or 'loop', user can select the ID Maps interactively from the graphical selection dialog simultaneously controlling the plot destination (same or new graphic device) and wherther or not the plot should be saved in a file. If 'loop', the interactive drawing cycle repeats untill the user cancells the process. Default is names of all ID Maps within the jointIdMap object.

complement

logical indicating wherether the complementary ecdf should be plotted the default is TRUE.

log

logical indicating if log scale should be used. The default is TRUE.

new.plot

logical indicating if the new graphic device should be created for plot. In interactive mode can be selected graphically. Default is FALSE.

file.copy

logical or a character string indicating if the plot should be saved to a file. If character string, it's content used as a file name and if TRUE, the default file named is used. In interactive mode can be toggled graphically. Default is FALSE.

copy.zoom

Zoom factor used when saving plot in a file. Default is 1.

verbose

if TRUE enables diagnostic messages. Default is FALSE.

...

Not used

See Also

For more information see JointIdMap.

Examples

 jointIdMap<-JointIdMap(examples$identDfList);

 #non-interactive ecdf plot
 #of 3 DBs DBs encapsulated within the JointIdMap object
 jointIdMap$ecdf.plot(idMapNames=c("NetAffx_F","DAVID_Q","EnVision_Q"));
 ## Not run: 
#  #interactive plot allowing to choose the DBs to be plotted
#  jointIdMap$ecdf.plot();
#  ## End(Not run)