IdMappingAnalysis (version 1.16.0)

getCompoundGroups.IdMapDiffCounts: Get counts for each compound event in IdMapDiffCounts

Description

Get counts for each compound event in IdMapDiffCounts. Used internally within IdMapDiffCounts$plot().

Usage

"getCompoundGroups"(this, verbose=FALSE, ...)

Arguments

verbose

If TRUE enables diagnostic messages. Default is FALSE.

...

Not used

Value

A list of data frames corresponding to a particular compaund event ('excess both', 'excess left' etc.) where each data frame has the same structure as a data frame within the IdMapDiffCounts object.

See Also

For more information see IdMapDiffCounts.

Examples

 #create IdMapDiffCounts object
 IDs<-IdMapBase$primaryIDs(examples$msmsExperimentSet);
 jointIdMap<-JointIdMap(examples$identDfList,primaryIDs=IDs);
 diffs<-jointIdMap$getDiff("NetAffx_F","DAVID_Q",verbose=TRUE);
 diffCounts<-IdMapDiffCounts(diffs);

 # get compound events
 groups<-diffCounts$getCompoundGroups();
 names(groups);
 groups$excess.both[1:10,];
 groups$same.list[1:10,];