IdMappingAnalysis (version 1.16.0)

getCorr.JointUniquePairs: Extract a set of correlation objects from given JointUniquePairs object and corresponding Corr object

Description

Generate a list of correlation objects based on a given correlation object treated as a 'joint' object(i.e. produced through the pipeline JointIdMap->UniquePairs->Corr and a set of matches for a set of DBs stored in a JointUniquePairs object.

Usage

"getCorr"(this, corr, groups=NULL, full.group=FALSE, verbose=FALSE, ...)

Arguments

corr

Corr object from which the Corr object(s) retrieved for each particular DB based on which the patricular Corr object is retrieved.

groups

Optional character vector of DB names encapsulated within the JointUniquePairs object defining the set of match groups to be used for retrieving the corresponding Corr objects. If NULL (default), all match groups within the given UniquePairsObject are used.

full.group

Determines if the resulting Corr object list should represent a full group. Default is FALSE.

verbose

if TRUE enables diagnostic messages. Default is FALSE.

...

Not used

Value

Corr object or a list ofCorr objects with names corresponding to the names of particular match groups contained within the given JointUniquePairs object

See Also

For more information see JointUniquePairs.

Examples

 # Create and plot the set of corrs for a given DB subset treating subset as a full group
 # and plot the correlation densities including union
 corrSet<- examples$jointUniquePairs$getCorr(examples$corr,
	groups=c("union", "NetAffx_Q", "DAVID_Q", "EnVision_Q"),
     full.group=TRUE, verbose=TRUE);
 Corr$plot(corrSet, title="");