IdMappingAnalysis (version 1.16.0)

getCorrData.JointUniquePairs: Create CorrData object from the JointUniquePairs object and two experiment sets

Description

Creates CorrData object from JointUniquePairs object and two experiment sets optionally subsetting on a list of ID Maps from the UniquePairsMatch object

Usage

"getCorrData"(this, expSet1, expSet2, groups=NULL, verbose=FALSE, ...)

Arguments

expSet1

First ExperimentSet object with primary IDs corresponding (partially intersecting) with primaryIDs of the given JointUniquePairs object.

expSet2

Second ExperimentSet object with primary IDs corresponding (partially intersecting) with secondaryIDs of the given JointUniquePairs object.

groups

If not NULL, defines the subset from UniquePairsMatch on which the full event group to be formed. Default is NULL.

verbose

if TRUE enables diagnostic messages. Default is FALSE.

...

Not used

Value

the CorrData object

See Also

For more information see JointUniquePairs.

Examples

 corrData<-examples$jointUniquePairs$getCorrData(
			examples$msmsExperimentSet,examples$mrnaExperimentSet,
			groups=c("NetAffx_Q", "DAVID_Q", "EnVision_Q"),verbose=TRUE);
 corrData$getSampleNames();