IdMappingAnalysis (version 1.16.0)

interactive.corr.plot.JointUniquePairs: Interactive plot of correlation densities

Description

Plots the density distributions for a set of correlation objects derived from JointUniquePairs and Corr objects with optional subsetting by a group of ID Maps. This is an interactive version of JointUniquePairs$corr.plot utilizing the [e-mail] wrapper functionality.

Usage

"interactive.corr.plot"(this, corr, groups="loop", new.plot=FALSE, file.copy=FALSE, plot.Union=TRUE, subsetting=FALSE, lineColors=NULL, lineStyles=NULL, lineWidths=2, verbose=TRUE, ...)

Arguments

corr

Corr object.

groups

Either ID Maps names, 'menu' or 'loop'. If ID Map names, the functionality is similar to UniquePairsMatch.corr.plot If 'menu' or 'loop', user can select the pair of ID Maps interactively from the graphical selection dialog simultaneously controlling the plot destination (same or new graphic device), wherther or not the plot should be saved in a file etc. If 'loop', the interactive drawing cycle repeats untill the user cancells the process.

new.plot

logical indicating if the new graphic device should be created for plot. In interactive mode can be selected graphically. Default is FALSE.

file.copy

logical indicating if the plot should be saved in a file. In interactive mode can be toggled graphically. Default is FALSE.

plot.Union

If TRUE (default), plots also the density of the correlation object corrsesponding to the union of a set of correlation objects. In interactive mode can be toggled graphically.

subsetting

If TRUE, subsets the Corr on a group of ID Maps or uses the original Corr otherwise. In interactive mode can be toggled graphically. Default is FALSE.

lineColors

The vector of line colors (recycled if necessary) for plotting the distributions of different Corr objects. If NULL (default), the predefined set of colors is used.

lineStyles

The vector of line styles (recycled if necessary) for plotting the distributions of different Corr objects. If NULL (default), the predefined set of line styles is used.

lineWidths

The vector of line widths (recycled if necessary) for plotting the distributions of different Corr objects. Default is 2.

verbose

If TRUE enables diagnostic messages. Default is FALSE.

...

Additional graphical parameters.

See Also

For more information see JointUniquePairs.

Examples

 #plot correlation densities for a given DB set
 #treating the given DB set as a full group (subsetting=TRUE)
 examples$jointUniquePairs$interactive.corr.plot(examples$corr,
		groups=c("NetAffx_Q","DAVID_Q","EnVision_Q"),
		subsetting=TRUE,new.plot=TRUE,file.copy=FALSE,verbose=TRUE,
		cex.lab=1.4,cex.legend=1.1);
 ## Not run: 
#  #plot correlation densities choosing the DB set interactively
#  examples$jointUniquePairs$interactive.corr.plot(examples$corr,
# 		copy.zoom=2,verbose=TRUE,cex.lab=1.4,cex.legend=1.1);
#  ## End(Not run)