IdMappingAnalysis (version 1.16.0)

interactive.mixture.plot.JointUniquePairs: Interactive plot of mixture model components

Description

Plots the correlation densities of the empirical fit, mixture fit and each of the mixture components for a mixture model derived from JointUniquePairs and Corr objects with optional subsetting by a group of ID Maps. This is an interactive version of JointUniquePairs$mixture.plot unitilizing the JointUniquePairs$interactive.plot wrapper functionality.

Usage

"interactive.mixture.plot"(this, corr, groups="loop", new.plot=FALSE, file.copy=FALSE, subsetting=FALSE, G=c(1:5), verbose=TRUE, ...)

Arguments

corr

Corr object.

groups

either ID Map names, 'menu' or 'loop'. If ID Map names, the functionality is similar to JointUniquePairs$mixture.plot If 'menu' or 'loop', user can select the pair of ID Maps interactively from the graphical selection dialog simultaneously controlling the plot destination (same or new graphic device) wherther or not the plot should be saved in a file etc. If 'loop', the interactive drawing cycle repeats untill the user cancells the process.

new.plot

logical indicating if the new graphic device should be created for plot. In interactive mode can be selected graphically. Default is FALSE.

file.copy

logical or a character string indicating if the plot should be saved to a file. If character string, it's content used as a file name and if TRUE, the default file named is formed and used. In interactive mode can be toggled graphically. Default is FALSE.

subsetting

If TRUE, subsets the Corr on a group of ID Maps to compute the mixture model or uses the original Corr otherwise. In interactive mode can be toggled graphically. Default is FALSE.

G

The number of mixture model components. If a numerical vector, the optimal mixture model is computed. Default is c(1:5).

verbose

If TRUE enables diagnostic messages. Default is FALSE.

...

Additional graphical parameters

See Also

For more information see JointUniquePairs.

Examples

 #plot mixture densities for a given DB set
 #treating the given DB set as a full group (subsetting=TRUE)
 examples$jointUniquePairs$interactive.mixture.plot(examples$corr,
		groups=c("NetAffx_Q","DAVID_Q","EnVision_Q"),
		subsetting=TRUE,new.plot=TRUE,file.copy=FALSE,G=c(1:5),
		cex.lab=1.4,cex.legend=1.2,verbose=TRUE);

 ## Not run: 
#  #plot mixture densities choosing the DB set interactively
#  examples$jointUniquePairs$interactive.mixture.plot(examples$corr,
# 		G=c(1:5),verbose=TRUE,cex.lab=1.4,cex.legend=1.1);
#  ## End(Not run)