IdMappingAnalysis (version 1.16.0)

interactive.plot.CorrData: Draw a scatterplot of experiment data interactively

Description

Draw a scatterplot of experiment data interactively.

Usage

"interactive.plot"(this, input="loop", new.plot=FALSE, file.copy=FALSE, copy.zoom=1, ...)

Arguments

input

character vector of primary IDs, vector of match pairs, "menu" or "loop". In case of "menu" or "loop" the set if primary IDs is determined interactively using graphical selection menu, and in case of "loop" the process of plotting repeates until user cancels it. If data series for more than one match pair to be displayed (in case input is a vector of primary IDs for example), the set of match pairs also selected intactively. Default is "loop".

new.plot

If TRUE, then new graphic device is opened for plotting. Default is FALSE.

file.copy

logical or a character string indicating if the plot should be saved to a file. If character string, it's content used as a file name and if TRUE, the default file named is used. Default is FALSE.

copy.zoom

Zoom factor used when saving plot in a file. Default is 1.

...

Additional graphical parameters including ones from plot.CorrData

See Also

For more information see CorrData.

Examples

 #non-interactive scatterplot plot with a single primary and secondary IDs pair and outcomes
 examples$corrData$interactive.plot(input=list(c("P07355","1568126_at")),
 		outcomePairs=examples$outcomeMap,proteinNames="ANXA2",
 		cols=c("green","red","darkblue"),cex=1.2,cex.main=1.2,font.main=4,cex.lab=1.2);

 ## Not run: 
#  #interactive scatterplot with a single primary ID (uniprot) and outcomes
#  examples$corrData$interactive.plot(c("P07355"), outcomePairs=examples$outcomeMap, proteinNames="ANXA2");
# 
#  #interactive scatterplot with multiple probeset IDs (uniprot) and without outcomes -  ANXA2 (annexin 2)
#  examples$corrData$interactive.plot(c("P07355", "P07384", "P09382"));
#  ## End(Not run)