IdMappingAnalysis (version 1.16.0)

summary.IdMapDiffCounts: Get a compaund event counts summary report

Description

Get a counts summary report where each row is a count of matches corresponding to a particular compound event

Usage

"summary"(object, ...)

Arguments

...

Not used

Value

A data.frame with a single 'counts' column where each row is a count of matches corresponding to a particular compound event.

See Also

For more information see IdMapDiffCounts.

Examples

 #create IdMapDiffCounts object
 IDs<-IdMapBase$primaryIDs(examples$msmsExperimentSet);
 jointIdMap<-JointIdMap(examples$identDfList,primaryIDs=IDs);
 diffs<-jointIdMap$getDiff("NetAffx_F","DAVID_Q",verbose=TRUE);
 diffCounts<-IdMapDiffCounts(diffs);

 # get summary
 diffCounts$summary();