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IdeoViz (version 1.6.0)

Plots data (continuous/discrete) along chromosomal ideogram

Description

Plots data associated with arbitrary genomic intervals along chromosomal ideogram.

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Version

Version

1.6.0

License

GPL-2

Maintainer

Shraddha Pai

Last Published

February 15th, 2017

Functions in IdeoViz (1.6.0)

wins_entiregenome

Data for example 3.
avgByBin

Aggregates data by genomic bins
plotOnIdeo

Plot data superimposed on chromosomal ideogram
plotChromValuePair

Plot a chromosome-value pair
getBins

getBins
binned_multiSeries

Data for vignette example 1.
wins

Data for vignette example 1.
getIdeo

Download ideogram table from UCSC
IdeoViz-package

Plots continuous or discrete data along chromosomal ideogram
GSM733664_broadPeaks

Data for vignette example 4.
hg18_ideo

Ideogram table for hg18
binned_fullGenome

Data for example 3.
binned_singleSeries

Data for example 2.
wins_discrete

Data for example 2.