distalAdj


    the output of <a rd-options="" href="/link/searchDistalCPs?package=InPAS&version=1.4.4" data-mini-rdoc="InPAS::searchDistalCPs">searchDistalCPs</a>


distalCPs

classifier

classifier_cutoff


    the searching range for the better CP sites


shift_range


    a <a rd-options="BSgenome" href="/link/BSgenome?package=InPAS&version=1.4.4&to=BSgenome" data-mini-rdoc="BSgenome::BSgenome">BSgenome</a> object


genome

 misc 

Alternative polyadenylation (APA) is one of the important
post-transcriptional regulation mechanisms which occurs in
most human genes. InPAS facilitates the discovery of novel
APA sites from RNAseq data. It leverages cleanUpdTSeq to fine
tune identified APA sites.

Jianhong Ou

InPAS

Identification of Novel alternative PolyAdenylation Sites (PAS)

distalAdj function


    the output of <a rd-options='' href='searchDistalCPs'>searchDistalCPs</a>



    a <a rd-options='BSgenome' href='BSgenome'>BSgenome</a> object


distalAdj: adjust distal CP sites by cleanUpdTSeq

Description

Usage

Arguments

Value

See Also