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InPAS (version 1.4.4)

get.regions.coverage: claculate coverage for giving region

Description

claculate coverage for giving region

Usage

get.regions.coverage(chr, utr3.regions.chr, hugeData, coverage, phmm=FALSE)

Arguments

chr
chromosome
utr3.regions.chr
the GRanges of region to be extracted
hugeData
is it a huge dataset?
coverage
output of coverageFromBedGraph
phmm
prepare data for singleSample analysis?

Value

GRanges with coverage data