getCov

bedgraph


    an object <a rd-options="BSgenome" href="/link/BSgenome?package=InPAS&version=1.4.4&to=BSgenome" data-mini-rdoc="BSgenome::BSgenome">BSgenome</a>


genome

seqLen


    extract coverage from bedgraph file


 misc 

Alternative polyadenylation (APA) is one of the important
post-transcriptional regulation mechanisms which occurs in
most human genes. InPAS facilitates the discovery of novel
APA sites from RNAseq data. It leverages cleanUpdTSeq to fine
tune identified APA sites.

Jianhong Ou

InPAS

Identification of Novel alternative PolyAdenylation Sites (PAS)

getCov function


    an object <a rd-options='BSgenome' href='BSgenome'>BSgenome</a>


getCov: extract coverage from bedgraph file

Description

Usage

Arguments

Value

See Also