proximalAdjByPWM


    the offset of positions of CP sites


PolyA_PWM

seqnames

starts

strands


    an <a rd-options="BSgenome" href="/link/BSgenome?package=InPAS&version=1.4.4&to=BSgenome" data-mini-rdoc="BSgenome::BSgenome">BSgenome</a> object


genome

shift_range

search_point_START


    adjust the proximal CP sites by polyA Position Weight Metrix. It only need 
    the PWM get match in upstream or downstream shift_range nr.


 misc 

Alternative polyadenylation (APA) is one of the important
post-transcriptional regulation mechanisms which occurs in
most human genes. InPAS facilitates the discovery of novel
APA sites from RNAseq data. It leverages cleanUpdTSeq to fine
tune identified APA sites.

Jianhong Ou

InPAS

Identification of Novel alternative PolyAdenylation Sites (PAS)

proximalAdjByPWM function


    an <a rd-options='BSgenome' href='BSgenome'>BSgenome</a> object


proximalAdjByPWM: adjust the proximal CP sites by PWM

Description

Usage

Arguments

Value

Details

See Also