searchProximalCPs


    output of <a rd-options="" href="/link/searchDistalCPs?package=InPAS&version=1.4.4" data-mini-rdoc="InPAS::searchDistalCPs">searchDistalCPs</a> or <a rd-options="" href="/link/distalAdj?package=InPAS&version=1.4.4" data-mini-rdoc="InPAS::distalAdj">distalAdj</a>


curr_UTR

window_size

MINSIZE


    how many nucleotides should be removed  from the end before 
        search, 0.1 means 10 percent.


cutEnd

search_point_START

search_point_END

 misc 

Alternative polyadenylation (APA) is one of the important
post-transcriptional regulation mechanisms which occurs in
most human genes. InPAS facilitates the discovery of novel
APA sites from RNAseq data. It leverages cleanUpdTSeq to fine
tune identified APA sites.

Jianhong Ou

InPAS

Identification of Novel alternative PolyAdenylation Sites (PAS)

searchProximalCPs function


    output of <a rd-options='' href='searchDistalCPs'>searchDistalCPs</a> or <a rd-options='' href='distalAdj'>distalAdj</a>


searchProximalCPs: search proximal CPsites

Description

Usage

Arguments

Value

See Also