totalCoverage


    coverage for each sample, outputs of 
        <a rd-options="" href="/link/coverageFromBedGraph?package=InPAS&version=1.4.4" data-mini-rdoc="InPAS::coverageFromBedGraph">coverageFromBedGraph</a>


coverage


    an object of <a rd-options="BSgenome" href="/link/BSgenome?package=InPAS&version=1.4.4&to=BSgenome" data-mini-rdoc="BSgenome::BSgenome">BSgenome</a>


genome

hugeData

groupList


    for huge dataset, it will read in the coverage from tmp files and merge them by groups


 misc 

Alternative polyadenylation (APA) is one of the important
post-transcriptional regulation mechanisms which occurs in
most human genes. InPAS facilitates the discovery of novel
APA sites from RNAseq data. It leverages cleanUpdTSeq to fine
tune identified APA sites.

Jianhong Ou

InPAS

Identification of Novel alternative PolyAdenylation Sites (PAS)

totalCoverage function


    coverage for each sample, outputs of 
        <a rd-options='' href='coverageFromBedGraph'>coverageFromBedGraph</a>



    an object of <a rd-options='BSgenome' href='BSgenome'>BSgenome</a>


totalCoverage: total coverage

Description

Usage

Arguments

Value