# epCA.inference.battery

##### epCA.inference.battery: Inference tests for Correspondence Analysis (CA) via InPosition.

Correspondence Analysis (CA) and a battery of inference tests via InPosition. The battery includes permutation and bootstrap tests.

- Keywords
- Bootstrap, multivariate, Permutation

##### Usage

```
epCA.inference.battery(DATA, DESIGN = NULL, make_design_nominal = TRUE,
masses = NULL, weights = NULL, hellinger = FALSE, symmetric = TRUE,
graphs = TRUE, k = 0, test.iters = 100, critical.value = 2)
```

##### Arguments

- DATA
original data to perform a CA on.

- DESIGN
a design matrix to indicate if rows belong to groups.

- make_design_nominal
a boolean. If TRUE (default), DESIGN is a vector that indicates groups (and will be dummy-coded). If FALSE, DESIGN is a dummy-coded matrix.

- masses
a diagonal matrix or column-vector of masses for the row items.

- weights
a diagonal matrix or column-vector of weights for the column it

- hellinger
a boolean. If FALSE (default), Chi-square distance will be used. If TRUE, Hellinger distance will be used.

- symmetric
a boolean. If TRUE (default) symmetric factor scores for rows and columns are computed. If FALSE, the simplex (column-based) will be returned.

- graphs
a boolean. If TRUE (default), graphs and plots are provided (via

`epGraphs`

)- k
number of components to return.

- test.iters
number of iterations

- critical.value
numeric. A value, analogous to a z- or t-score to be used to determine significance (via bootstrap ratio).

##### Details

`epCA.inference.battery`

performs correspondence analysis and inference tests on a data matrix.
If the expected time to compute the results (based on `test.iters`

) exceeds 1 minute, you will be asked (via command line) if you want to continue.

##### Value

Returns two lists ($Fixed.Data and $Inference.Data). For $Fixed.Data, see `epCA`

, `coreCA`

for details on the descriptive (fixed-effects) results.

$Inference.Data returns:

Permutation tests of components. p-values ($p.vals) and distributions of eigenvalues ($eigs.perm) for each component

Bootstrap tests of measures (columns). See `boot.ratio.test`

output details.

Permutation tests of components. p-values ($p.val) and distributions of total inertia ($inertia.perm)

##### See Also

##### Examples

```
# NOT RUN {
##warning: this example takes a while to compute. This is why it is reduced.
data(authors)
ca.authors.res <- epCA.inference.battery(authors$ca$data/100)
# }
```

*Documentation reproduced from package InPosition, version 0.12.7.1, License: GPL-2*