InflectSSP (version 1.5)

Correction: This function corrects the normalized abundance of each protein using a correction constant that is calculated in this function. The correction constant is determined using the difference between actual and predicted fit at the proteome level.

Description

This function corrects the normalized abundance of each protein using a correction constant that is calculated in this function. The correction constant is determined using the difference between actual and predicted fit at the proteome level.

Usage

Correction(PSM, UP, Data_CurveFit1Parameters, Data_Normalized, Data_Quantified)

Value

the corrected and normalized abundance data for each protein

Arguments

PSM

the number of peptide spectrum matches that are deemed acceptable for reporting

UP

the number of unique peptides for a protein that are deemed acceptable for reporting

Data_CurveFit1Parameters

the parameters determined from Curve Fit 1 operation for proteome melts

Data_Normalized

the normalized abundance data for each protein determined in the Normalize function.

Data_Quantified

the median normalized abundance data at the proteome level

Examples

if (FALSE) {
Data_Corrected<-Correction(PSM,UP,Data_CurveFit1Parameters,
Data_Normalized,Data_Quantified)
}