ClusterCols

Data

The number of clusters to divide the dendrogram in. Default is NULL.

nrclusters

A character vector with the colours to be used. Default is NULL.

cols

A character vector of a specific set of objects to be coloured. Default is NULL.

colorComps

Internal function of <code>ClusterPlot</code>.

Several integrative data methods in which information of objects from different data sources can be combined are included in the IntClust package. As a single data source is limited in its point of view, this provides more insight and the opportunity to investigate how the variables are interconnected. Clustering techniques are to be applied to the combined information. For now, only agglomerative hierarchical clustering is implemented. Further, differential gene expression and pathway analysis can be conducted on the clusters. Plotting functions are available to visualize and compare results of the different methods.

ClusterCols: Matching clusters with colours

Description

Usage

Arguments