CreateCrossValFolds

Creates multiple cross-validation folds from the data. Format is a list of
IntLIMData training and testing pairs. The "training" slot contains all data
except that in the given fold, and the "testing" contains all data in the fold.

This workflow takes analyte levels from two different types of analytes (e.g. gene expression and metabolite abundance), meta-information on each analyte type, and sample outcome and metadata to identify analyte pairs that are significantly associated with a continuous or discrete outcome (e.g. drug response or tumor type). The following references describe the methods in this package: (1) Jalal K. Siddiqui, et al. (2018) <doi:10.1186/s12859-018-2085-6>, (2) Andrew Patt, et al. (2019) <doi:10.1007/978-1-4939-9027-6_23>.

Tara Eicher

IntLIM

Integration of Omics Data Using Linear Modeling

Jalal Siddiqui

Shunchao Wang

Rohith Vanam

Elizabeth Baskin

Kyle Spencer

Ewy Mathe

CreateCrossValFolds function

<dl><dt>inputData</dt>
<dd>IntLimData object (output of ReadData()) with analylte levels and
associated meta-data</dd>
<dt>folds</dt>
<dd>number of folds to create</dd></dl>

Arguments

Creates multiple cross-validation folds from the data. Format is a list of
IntLIMData training and testing pairs. The "training" slot contains all data
except that in the given fold, and the "testing" contains all data in the fold. — CreateCrossValFolds

<dl>

<dt>inputData</dt>
<dd>IntLimData object (output of ReadData()) with analylte levels and
associated meta-data</dd>


<dt>folds</dt>
<dd>number of folds to create</dd>

</dl>

Creates multiple cross-validation folds from the data. Format is a list of
IntLIMData training and testing pairs. The "training" slot contains all data
except that in the given fold, and the "testing" contains all data in the fold.

CreateCrossValFolds: Creates multiple cross-validation folds from the data. Format is a list of IntLIMData training and testing pairs. The "training" slot contains all data except that in the given fold, and the "testing" contains all data in the fold.

Description

Usage

Value

Arguments