IntLIM (version 2.0.2)

ProcessResultsAllFolds: Retrieve significant pairs, based on adjusted p-values, interaction coefficient percentile, and r-squared values. This is a wrapper for ProcessResults.

Description

Retrieve significant pairs, based on adjusted p-values, interaction coefficient percentile, and r-squared values. This is a wrapper for ProcessResults.

Usage

ProcessResultsAllFolds(
  inputResults,
  inputData,
  pvalcutoff = 0.05,
  interactionCoeffPercentile = 0.5,
  rsquaredCutoff = 0,
  treecuts = 0
)

Value

List of IntResults object with model results (now includes correlations)

Arguments

inputResults

List of IntLimResults object with model results (output of RunIntLimAllFolds())

inputData

List of MultiDataSet objects (output of CreateCrossValFolds()) with analyte levels and associated meta-data

pvalcutoff

cutoff of FDR-adjusted p-value for filtering (default 0.05)

interactionCoeffPercentile

percentile cutoff for interaction coefficient (default bottom 10 percent (high negative coefficients) and top 10 percent (high positive coefficients))

rsquaredCutoff

cutoff for lowest r-squared value

treecuts

user-selected number of clusters (of pairs) to cut the tree into