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IntNMF (version 1.0)

Integrative Clustering of Multiple Genomic Dataset

Description

Carries out integrative clustering analysis using multiple types of genomic dataset.

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Version

Install

install.packages('IntNMF')

Monthly Downloads

256

Version

1.0

License

GPL-2

Maintainer

Rama Raghavan

Last Published

April 23rd, 2016

Functions in IntNMF (1.0)

ClusterPurity

A function to measure cluster purity
SilhouettePlot

A function to plot silhouette width
adj.cssls

Solve matrix equation
ConsensusMatPlot

A function to create image plot of the consensus matrix
logit

logit
H.fcnnls

Function to calculate H matrix using Nonnegative Least Square method
nmf.opt.k

Selection of optimum number of clusters (k)
W.fcnnls

Function to calculate common W using Nonnegative Least Square method
ClusterEntropy

A function to measure cluster entropy