IsotopeR (version 0.5.4)

Bi.plots: Mixing Space, 2 sources

Description

2 source mixing space plot used to plot the source estimations and the observations or model fits.

Usage

Bi.plots(jags.1, X, sources=NA, plot.mix = FALSE, plot.ind.flag = FALSE, me.flag = FALSE,
color.plots=TRUE, xlab=NULL, ylab=NULL, xlim=NULL, ylim=NULL)

Arguments

jags.1

A jags object, output from the runjags package.

X

Isotopic mixture data

sources

A matrix including all source information. Should be formatted as a source file as discussed in the IsotopeR vignette.

plot.mix

A flag, plots the estimated mixture values, when TRUE (1). If FALSE (0) then the the function plots the observed mixture values.

plot.ind.flag

Legacy argument, not currently used.

me.flag

Denotes wether to plot the measurement error along with observations.

color.plots

Denotes whether plots should be color, or black and white. The user does not have the ability to specify which colors should be used.

xlab

A character vector for the x-axis label. If NULL the labels from the mixture file will be used.

ylab

A character vector for the y-axis label. If NULL the labels from the mixture file will be used.

xlim

The x-axis plot limits. If NULL this will be determined automatically.

ylim

The y-axis limits. If NULL this will be determined automatically.

Examples

## Not run: 
# IsotopeR()
# load(SampleOutput.Rdata)
# Bi.plots(jags.1=jags.out, X=X)
# ## End(Not run)