JASPAR (version 0.0.1)

JASPAR-package: The Package for R modules for JASPAR databases

Description

R modules for JASPAR databases

Value

NULL

Details

Package:

JASPAR

Type:

Package

License:

GPL (>= 2)

This package contains: modules and functions for JASPAR data processing and visualization.

An overview of functions

Function

Description

## To install from online repositories (e.g. CRAN) install.packages(pkgs="JASPAR", repos="http://cran.r-project.org")

## Sometimes the offical repository might not be up to date, ## then you may install it from a downloaded source file; ## please replace '' with actual version numbers: install.packages(pkgs="JASPAR_.tar.gz", repos=NULL)

## Load the package and get a complete list of functions, use library(JASPAR) ls("package:JASPAR")

## help documantation of the package help(JASPAR) # this page

References

Zhao et al (2013), "JASPAR 2013: An extensively expanded and updated open-access database of transcription factor binding profiles." (In preparation)

See citation("JASPAR") for BibTeX entries for LaTeX users.

See Also

make_template

Examples

require(JASPAR)        # load JASPAR
help(JASPAR)           # a help document of JASPAR
## data(package="JASPAR") # a list of datasets available in JASPAR (TBA)
ls("package:JASPAR")   # a list of functions available in JASPAR
help(package="JASPAR") # help documentation on JASPAR
citation("JASPAR")     # citation for publications
demo("JASPAR-demo")    # run the demo

## view JASPAR Description
packageDescription("JASPAR")

## ## view JASPAR vignette (TBA)
## vignette("JASPAR-vignette",package="JASPAR")