BoxplotDelta

Function <code>BoxplotDelta</code> produces boxplots of the Jacquard coefficients from
 a list structure containing nine matrices with the pairwise coefficients. The
 diagonals of J1 and J7 are plotted in separate boxplots.

Graphics

Contains procedures to estimate the nine condensed Jacquard genetic identity coefficients
(Jacquard, 1974) <doi:10.1007/978-3-642-88415-3> by constrained least squares
(Graffelman et al., 2024) <doi:10.1101/2024.03.25.586682> and by the method of moments
(Csuros, 2014) <doi:10.1016/j.tpb.2013.11.001>. These procedures require previous estimation of the
allele frequencies. Functions are supplied that estimate relationship parameters that derive from the Jacquard
coefficients, such as individual inbreeding coefficients and kinship coefficients.

Jan Graffelman

Jacquard

Estimation of Jacquard's Genetic Identity Coefficients

BoxplotDelta function

<dl> <dt>J</dt>
<dd>The list structure with nine fields consisting of nine matrices</dd> <dt>ind.sub</dt>
<dd>Index for subsetting the individuals</dd> <dt>...</dt>
<dd>Additional arguments to pass on to <code>boxplot</code></dd></dl>

Arguments

Jan Graffelman (jan.graffelman@upc.edu)

Author

Boxplots of Jacquard Coefficients — BoxplotDelta

<dl>

 <dt>J</dt>
<dd>The list structure with nine fields consisting of nine matrices</dd>

 <dt>ind.sub</dt>
<dd>Index for subsetting the individuals</dd>

 <dt>...</dt>
<dd>Additional arguments to pass on to <code>boxplot</code></dd>

</dl>

BoxplotDelta: Boxplots of Jacquard Coefficients

Description

Usage

Value

Arguments

Author

Examples