Jacquard (version 1.0.2)

MakeM: Create matrix of conditional joint genotype probabilities

Description

Function MakeM creates the matrix of conditional joint genotype probabilities for biallelic markers for a given allele frequency.

Usage

MakeM(p)

Value

a 9 by 9 matrix

Arguments

p

the allele frequency

Author

Jan Graffelman ([e-mail])

References

Csuros, M. (2014) Non-identifiability of identity coefficients at biallelic loci. Theoretical Population Biology 92, pp. 22--29. doi: 10.1016/j.tpb.2013.11.001

Graffelman, J., Weir, B.S. and Goudet, J. (2024) Estimation of Jacquard's genetic identity coefficients with bi-allelic variants by constrained least-squares. Under review.

Examples

set.seed(123)
p <- runif(1)
M <- MakeM(p)