SimulatedPedigree

<p>A matrix containing 111 individuals (rows), pedigree information (first five columns) and 20.000 single
  nucleotide polymorphisms (remaining columns) coded in (0,1,2) format and simulated according to a
  pedigree of 20 unrelated founders with six posterior generations.</p>

datasets

Contains procedures to estimate the nine condensed Jacquard genetic identity coefficients
(Jacquard, 1974) <doi:10.1007/978-3-642-88415-3> by constrained least squares
(Graffelman et al., 2024) <doi:10.1101/2024.03.25.586682> and by the method of moments
(Csuros, 2014) <doi:10.1016/j.tpb.2013.11.001>. These procedures require previous estimation of the
allele frequencies. Functions are supplied that estimate relationship parameters that derive from the Jacquard
coefficients, such as individual inbreeding coefficients and kinship coefficients.

Jan Graffelman

Jacquard

Estimation of Jacquard's Genetic Identity Coefficients

SimulatedPedigree function

<p>A data frame containing 111 rows and 20.005 columns.</p>

SimulatedPedigree: Simulated SNP data according to a Pedigree

Description

Usage

Arguments

Format

Details

References

Examples