compKc-class

show,compKc-method

initialize,compKc-method

plot,compKc-method

	A matrix containing the results from a call to compareSpmCollection

classes

Multi sample aCGH analysis package using kernel
convolution

Jorma de Ronde

KCsmart

Multi sample aCGH analysis package using kernel convolution

compKc-class function

Objects can not be created by the user directly but rather through compareSpmCollection.

Objects from the Class

<dl>
    <dt><code>spmCollection</code>:</dt><dd>The original spmCollection used to compare the samples</dd> <dt><code>method</code>:</dt><dd>The method used to create the null distribution</dd> <dt><code>siggenesResult</code>:</dt><dd>In case of the siggenes method being used, a siggenes object containing the fdr-cutoff table</dd> <dt><code>snrResult</code>:</dt><dd>In case of the signal-noise/permutation based method being used, the signal-to-noise data and a matrix with the (class based) permutations</dd> </dl> 

Slots

<dl>
    <dt>initialize</dt><dd><code>signature(.Object = "compKc")</code>: Internal use only </dd> <dt>plot</dt><dd><code>signature(x = "compKc")</code>: ... </dd> <dt>show</dt><dd><code>signature(object = "compKc")</code>: ... </dd> </dl> 

Methods

A matrix containing the results from a call to compareSpmCollection

compKc-class: KC smart comparative

Description

Arguments

Objects from the Class

Slots

Methods

Examples